Taha Ahmed
021afc363f
Wipe now includes minitoc auxiliary files
4 years ago
Taha Ahmed
18e1d82be7
Allow assets.external to copy directories, not just files.
4 years ago
Taha Ahmed
22120b2337
assets.external now supports specifying target subdir
...
I did this to lessen risk of filename clashes in the thesis/assets/data/
folder. This way, I can easily have a separate subdir for each manuscript.
4 years ago
Taha Ahmed
d6866b7832
files in assets/references/ actually need to be overwritten
...
since they are bibtex libraries which often change on disk
and this copying is how we update the thesis's copy of them
4 years ago
Taha Ahmed
52f8fb5ea8
external assets for thesis now handled more robustly
...
we can now find all external.assets file in the entire assets/ tree
also copy operation does not overwrite
4 years ago
Taha Ahmed
0109401636
Also match .glstex aux files
5 years ago
Taha Ahmed
d2df646a8c
Exploded the list of aux filetypes into a list to allow more comments,
...
and added *.ist to the list.
5 years ago
Taha Ahmed
511fd8cad3
Added push functionality Gotify CLI for longer runs.
5 years ago
Taha Ahmed
b000f1b489
Don't clean *.bcf files as they are useful when generating stand-alone bibliographies using biber
5 years ago
Taha Ahmed
0ee110ac18
Excluded *.svg, *.pdf and extensionless files from low-res photos
...
in the special thesis submodule.
There is no need to convert pdf, svg to jpeg and shrink even in
thesis draft mode.
5 years ago
Taha Ahmed
696c5a2127
Added more filetypes to chertex.sh clean-up <2>.
5 years ago
Taha Ahmed
482ba40ede
The current assets.external implementation cannot handle empty lines.
...
Added a comment to warn about that.
5 years ago
Taha Ahmed
32fa1b848f
Fixed low-res photos getting re-created every run.
...
It was missing a touch to the lastrun file in case of success. Now added.
5 years ago
Taha Ahmed
924ce8de2b
env bash is better for portability, I heard.
5 years ago
Taha Ahmed
8152d3de61
Added "list-of-schemes" and "list-of-reactions" to aux files.
6 years ago
Taha Ahmed
10254e0377
Removed extraneous and possibly confusing echo "delay completed".
6 years ago
Taha Ahmed
897293de2c
Misplaced cd command caused working directory errors. Fixed.
6 years ago
fb97a2acc8
Thesis: create low-res photos on-the-fly from existing photos
6 years ago
Taha Ahmed
93fbb4586f
Cosmetic changes, should improve UX a little
7 years ago
Taha Ahmed
1d0d8f3950
chertex.sh now reads and fetches external assets for thesis
7 years ago
Taha Ahmed
67db6ef159
Added a total runtime to script output.
7 years ago
Taha Ahmed
904cdd62a4
Created two new scripts for launching Chrome webapp windows.
7 years ago
Taha Ahmed
2c5b5cd2c3
The "job complete"-block now aligns properly for both summer and wintertime.
7 years ago
Taha Ahmed
fdff311703
Changed all absolute paths to so they begin "/media/bay/..."
7 years ago
Taha Ahmed
b7d10d9863
Decreased wait (sleep) times for chertex.sh slightly.
7 years ago
1e6ce316f1
Corrected exit statuses in chertex.sh to zero for success and one otherwise.
9 years ago
97e446e480
Completed script that manages and builds jekyll site.
10 years ago
Taha Ahmed
ef85917a71
Mainly updates to the way chertex.sh handles Shiny.
11 years ago
Taha Ahmed
4ef82b2e13
chertex.sh now handles sample-matrix jobs only to produce HTML (Shiny) output.
...
Previously a pdf file was always created as well, but from now on,
sample-matrix will be exclusively used in the Shiny app.
11 years ago
c7f5f7e6f8
The integration between chertex.sh and shiny-matrix.sh now works better.
...
Running chertex.sh on sample-matrix.Rnw kills previous shiny::runApp() instances,
and creates a new and persistent shiny instance using the nohup command.
11 years ago
a6daa3aced
Added shiny-matrix.sh, and now chertex.sh updates the Shiny matrix.
11 years ago
Taha Ahmed
59e38ea466
Added date information to end of chertex.sh output.
11 years ago
95164fa0a3
Added support for knitr jobs as well.
...
chertex.sh will use knitr instead of pgfSweave if it detects a file name ".knitme"
in the directory of the current job. Crude solution, but it should work.
12 years ago
724ebff898
Added support for new sample-matrix markdown source files.
12 years ago
8f939e4d83
Added *.Rmd files to the set of returned files after directory wipe (option 3).
12 years ago
f4252bf9c2
Added conversion of png to low-res png (25% of original size).
13 years ago
f6af643df4
Added *.fls to list of aux file types (used for clean-up option).
13 years ago
4be1505333
Added a check for *.rda files after directory wiping.
13 years ago
8082ea3039
The check for Rproj files now fixed and works properly.
...
An answer on stackoverflow provided by the basis for the code.
13 years ago
4b224b0c01
Now checks if Rproj exists before attempting to copy it.
...
Embarrasing oversight. Rproj file may not always exist (only created if an Rstudio project has been created in that directory).
13 years ago
8f8b07a485
chertex.sh now keeps *.Rproj files after wiping a directory. This is necessary for RStudio's project system.
13 years ago
1c67e1b2c6
Added support for makeglossaries to .latexmkrc
...
Incorporated the contents of previous ltxmkshellescape.rc
into the new .latexmkrc.
Updated chertex.sh to reflect the new rc file structure.
13 years ago
710b12deaa
Added a timestamp to the dirname in the tmp directory. This ensures uniqueness.
13 years ago
07ce71f33f
Added an option to wipe the current directory.
...
Crude implementation currently, but it appears to work. Good enough.
13 years ago
1b13d6e27d
Added explanatory comment.
14 years ago
7d88ea27cc
TIFF conversion to PNG and aggregated PDF combined in semtiffconv.sh.
...
For use with new SEM images.
Just run the command once, and PNG files and one PDF will be created in
working directory where semtiffconv.sh is called.
14 years ago
74182ae148
Added *.lof and *.tdo to clean-up.
14 years ago
d168eab7b9
Changed "require" to "request" in user info message.
14 years ago
710955d247
Added support for latexmk shell escape in chertex.sh. Added clean-up option.
14 years ago
b0b46e1879
Batch-processing of tikz files now uses tikz2pdf, successfully.
14 years ago
Taha Ahmed
Taha Ahmed
Taha Ahmed
Taha Ahmed