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  • 687379932f Compile only paper or only SI with dynamically set master Taha Ahmed 2023-09-06 23:03:50 +0200
  • d587da571a New script to compile Markdown manuscript Taha Ahmed 2023-09-06 21:45:23 +0200
  • 205c8a8afe Restore thesis.bcf from git commit if modified in workspace Taha Ahmed 2023-07-04 23:14:59 +0200
  • 5a73e3e49d Fixed a bug: path_thesis should be path_wd. Taha Ahmed 2023-06-09 01:15:54 +0200
  • c965437a0f No more file not found errors during cleanup Taha Ahmed 2023-05-29 23:23:36 +0200
  • 51e2ca725b auxiliary file .out is by hyperref (comment) Taha Ahmed 2023-03-23 22:40:17 +0100
  • 7ef254dd69 Added minitoc aux files to list of aux files. Taha Ahmed 2023-03-01 11:45:27 +0100
  • 688c7404ef Added flag that disables Gotify notification Taha Ahmed 2022-12-28 02:29:27 +0100
  • 44ff1cfdc1 Gotify via CURL instead of CLI for better flexibility Taha Ahmed 2022-12-19 23:24:12 +0100
  • 296cc79bb9 No need to use "-r .latexmkrc" for latexmk command Taha Ahmed 2022-06-06 00:22:43 +0200
  • 2aded2bfc5 Added script that converts git submodules to regular git repos. Taha Ahmed 2022-01-23 21:56:15 +0100
  • 2db7a877c8 clean *.lol files Taha Ahmed 2021-02-04 01:54:24 +0100
  • cab448cfd5 Refactor: improved arg handling, added usage, colors and better messaging. Taha Ahmed 2020-12-28 23:22:48 +0100
  • 0534288dcc Fixed two issues: handle spaces in paths, and don't copy assets.external into .lowres tree Taha Ahmed 2020-10-20 02:50:34 +0200
  • e467fb74df Improved finding new photos and converting them to lower-res version Taha Ahmed 2020-10-13 03:37:15 +0200
  • c7d7b1db3c rsync line was using poor syntax. Fixed. Taha Ahmed 2020-10-12 01:43:11 +0200
  • 021afc363f Wipe now includes minitoc auxiliary files Taha Ahmed 2020-10-07 20:25:29 +0200
  • 18e1d82be7 Allow assets.external to copy directories, not just files. Taha Ahmed 2020-09-30 12:42:52 +0200
  • 22120b2337 assets.external now supports specifying target subdir Taha Ahmed 2020-09-29 14:37:38 +0200
  • d6866b7832 files in assets/references/ actually need to be overwritten Taha Ahmed 2020-09-05 01:30:49 +0200
  • 52f8fb5ea8 external assets for thesis now handled more robustly Taha Ahmed 2020-08-31 19:46:36 +0200
  • 0109401636 Also match .glstex aux files Taha Ahmed 2020-07-06 01:47:31 +0200
  • d2df646a8c Exploded the list of aux filetypes into a list to allow more comments, Taha Ahmed 2020-07-05 17:40:25 +0200
  • 511fd8cad3 Added push functionality Gotify CLI for longer runs. Taha Ahmed 2020-04-17 01:49:07 +0200
  • b000f1b489 Don't clean *.bcf files as they are useful when generating stand-alone bibliographies using biber Taha Ahmed 2020-02-04 20:50:57 +0100
  • 0ee110ac18 Excluded *.svg, *.pdf and extensionless files from low-res photos Taha Ahmed 2019-10-08 01:10:29 +0200
  • 696c5a2127 Added more filetypes to chertex.sh clean-up <2>. Taha Ahmed 2019-09-26 01:59:15 +0200
  • 482ba40ede The current assets.external implementation cannot handle empty lines. Taha Ahmed 2019-09-18 15:33:31 +0200
  • 32fa1b848f Fixed low-res photos getting re-created every run. Taha Ahmed 2019-09-13 02:36:01 +0200
  • 924ce8de2b env bash is better for portability, I heard. Taha Ahmed 2019-09-10 00:29:17 +0200
  • 8152d3de61 Added "list-of-schemes" and "list-of-reactions" to aux files. Taha Ahmed 2019-01-08 15:56:58 +0100
  • 10254e0377 Removed extraneous and possibly confusing echo "delay completed". Taha Ahmed 2018-09-27 19:41:21 +0200
  • 897293de2c Misplaced cd command caused working directory errors. Fixed. Taha Ahmed 2018-09-16 19:46:17 +0200
  • fb97a2acc8 Thesis: create low-res photos on-the-fly from existing photos Taha Ahmed 2018-09-16 17:04:58 +0200
  • 93fbb4586f Cosmetic changes, should improve UX a little Taha Ahmed 2018-06-08 06:09:04 +0200
  • 1d0d8f3950 chertex.sh now reads and fetches external assets for thesis Taha Ahmed 2018-06-08 06:06:25 +0200
  • 67db6ef159 Added a total runtime to script output. Taha Ahmed 2018-05-24 03:12:28 +0200
  • 904cdd62a4 Created two new scripts for launching Chrome webapp windows. Taha Ahmed 2018-05-24 02:37:36 +0200
  • 2c5b5cd2c3 The "job complete"-block now aligns properly for both summer and wintertime. Taha Ahmed 2018-01-24 00:46:03 +0100
  • fdff311703 Changed all absolute paths to so they begin "/media/bay/..." Taha Ahmed 2018-01-24 00:22:12 +0100
  • b7d10d9863 Decreased wait (sleep) times for chertex.sh slightly. Taha Ahmed 2017-10-10 09:58:51 +0200
  • 1e6ce316f1 Corrected exit statuses in chertex.sh to zero for success and one otherwise. Taha Ahmed 2016-07-07 04:39:21 +0200
  • 97e446e480 Completed script that manages and builds jekyll site. Taha Ahmed 2014-09-12 20:36:46 +0200
  • ef85917a71 Mainly updates to the way chertex.sh handles Shiny. Taha Ahmed 2014-05-21 17:01:12 +0200
  • 4ef82b2e13 chertex.sh now handles sample-matrix jobs only to produce HTML (Shiny) output. Taha Ahmed 2014-05-21 14:13:52 +0200
  • c7f5f7e6f8 The integration between chertex.sh and shiny-matrix.sh now works better. Taha Ahmed 2014-01-13 11:21:15 +0100
  • a6daa3aced Added shiny-matrix.sh, and now chertex.sh updates the Shiny matrix. Taha Ahmed 2014-01-12 09:16:32 +0100
  • 59e38ea466 Added date information to end of chertex.sh output. Taha Ahmed 2013-12-06 17:36:29 +0100
  • 95164fa0a3 Added support for knitr jobs as well. Taha Ahmed 2012-10-03 20:23:04 +0200
  • 724ebff898 Added support for new sample-matrix markdown source files. Taha Ahmed 2012-09-30 23:05:40 +0200
  • 8f939e4d83 Added *.Rmd files to the set of returned files after directory wipe (option 3). Taha Ahmed 2012-09-30 21:44:44 +0200
  • f4252bf9c2 Added conversion of png to low-res png (25% of original size). Taha Ahmed 2012-07-13 17:19:02 +0200
  • f6af643df4 Added *.fls to list of aux file types (used for clean-up option). Taha Ahmed 2012-06-14 13:30:21 +0200
  • 4be1505333 Added a check for *.rda files after directory wiping. Taha Ahmed 2012-02-17 18:13:05 +0100
  • 8082ea3039 The check for Rproj files now fixed and works properly. Taha Ahmed 2012-01-29 20:24:44 +0100
  • 4b224b0c01 Now checks if Rproj exists before attempting to copy it. Taha Ahmed 2012-01-28 23:18:28 +0100
  • 8f8b07a485 chertex.sh now keeps *.Rproj files after wiping a directory. This is necessary for RStudio's project system. Taha Ahmed 2012-01-28 23:09:36 +0100
  • 1c67e1b2c6 Added support for makeglossaries to .latexmkrc Taha Ahmed 2011-12-29 23:25:39 +0100
  • 710b12deaa Added a timestamp to the dirname in the tmp directory. This ensures uniqueness. Taha Ahmed 2011-12-28 18:49:17 +0100
  • 07ce71f33f Added an option to wipe the current directory. Taha Ahmed 2011-12-28 17:23:11 +0100
  • 1b13d6e27d Added explanatory comment. Taha Ahmed 2011-08-25 13:11:12 +0200
  • 7d88ea27cc TIFF conversion to PNG and aggregated PDF combined in semtiffconv.sh. Taha Ahmed 2011-08-20 17:22:01 +0200
  • 74182ae148 Added *.lof and *.tdo to clean-up. Taha Ahmed 2011-04-26 14:07:37 +0200
  • d168eab7b9 Changed "require" to "request" in user info message. Taha Ahmed 2011-04-19 10:07:42 +0200
  • 710955d247 Added support for latexmk shell escape in chertex.sh. Added clean-up option. Taha Ahmed 2011-04-17 15:02:26 +0200
  • b0b46e1879 Batch-processing of tikz files now uses tikz2pdf, successfully. Taha Ahmed 2011-04-11 16:12:05 +0200
  • 91f655e744 I made a few changes to suit my needs bettter. Taha Ahmed 2011-03-29 15:58:17 +0200
  • ad16030373 tikz2pdf: python script by Hans Meine. Original version, as downloaded. Taha Ahmed 2011-03-29 15:57:14 +0200
  • 01a57a4b92 Removed biber from .gitignore. Taha Ahmed 2011-03-29 15:56:25 +0200
  • 2c981eebca Switched from latexmk to R CMD texi2dvi. Taha Ahmed 2011-03-13 21:25:58 +0100
  • 6b68f24a12 Cosmetic changes in chertex. Updated some comments, mainly. Taha Ahmed 2011-03-04 16:15:22 +0100
  • 0745dbe501 Initial commit. Files as-is. Currently chertex.sh and simpledelay.sh are most used. Taha Ahmed 2011-01-16 18:45:52 +0100