29 Commits (ef85917a7157b7580ef148256433306c511299d3)
 

Author SHA1 Message Date
Taha Ahmed ef85917a71 Mainly updates to the way chertex.sh handles Shiny. 11 years ago
Taha Ahmed 4ef82b2e13 chertex.sh now handles sample-matrix jobs only to produce HTML (Shiny) output.
Previously a pdf file was always created as well, but from now on,
sample-matrix will be exclusively used in the Shiny app.
11 years ago
Taha Ahmed c7f5f7e6f8 The integration between chertex.sh and shiny-matrix.sh now works better.
Running chertex.sh on sample-matrix.Rnw kills previous shiny::runApp() instances,
and creates a new and persistent shiny instance using the nohup command.
11 years ago
Taha Ahmed a6daa3aced Added shiny-matrix.sh, and now chertex.sh updates the Shiny matrix. 11 years ago
Taha Ahmed 59e38ea466 Added date information to end of chertex.sh output. 11 years ago
Taha Ahmed 95164fa0a3 Added support for knitr jobs as well.
chertex.sh will use knitr instead of pgfSweave if it detects a file name ".knitme"
in the directory of the current job. Crude solution, but it should work.
12 years ago
Taha Ahmed 724ebff898 Added support for new sample-matrix markdown source files. 12 years ago
Taha Ahmed 8f939e4d83 Added *.Rmd files to the set of returned files after directory wipe (option 3). 12 years ago
Taha Ahmed f4252bf9c2 Added conversion of png to low-res png (25% of original size). 13 years ago
Taha Ahmed f6af643df4 Added *.fls to list of aux file types (used for clean-up option). 13 years ago
Taha Ahmed 4be1505333 Added a check for *.rda files after directory wiping. 13 years ago
Taha Ahmed 8082ea3039 The check for Rproj files now fixed and works properly.
An answer on stackoverflow provided by the basis for the code.
13 years ago
Taha Ahmed 4b224b0c01 Now checks if Rproj exists before attempting to copy it.
Embarrasing oversight. Rproj file may not always exist (only created if an Rstudio project has been created in that directory).
13 years ago
Taha Ahmed 8f8b07a485 chertex.sh now keeps *.Rproj files after wiping a directory. This is necessary for RStudio's project system. 13 years ago
Taha Ahmed 1c67e1b2c6 Added support for makeglossaries to .latexmkrc
Incorporated the contents of previous ltxmkshellescape.rc
into the new .latexmkrc.
Updated chertex.sh to reflect the new rc file structure.
13 years ago
Taha Ahmed 710b12deaa Added a timestamp to the dirname in the tmp directory. This ensures uniqueness. 13 years ago
Taha Ahmed 07ce71f33f Added an option to wipe the current directory.
Crude implementation currently, but it appears to work. Good enough.
13 years ago
Taha Ahmed 1b13d6e27d Added explanatory comment. 14 years ago
Taha Ahmed 7d88ea27cc TIFF conversion to PNG and aggregated PDF combined in semtiffconv.sh.
For use with new SEM images.
Just run the command once, and PNG files and one PDF will be created in
working directory where semtiffconv.sh is called.
14 years ago
Taha Ahmed 74182ae148 Added *.lof and *.tdo to clean-up. 14 years ago
Taha Ahmed d168eab7b9 Changed "require" to "request" in user info message. 14 years ago
Taha Ahmed 710955d247 Added support for latexmk shell escape in chertex.sh. Added clean-up option. 14 years ago
Taha Ahmed b0b46e1879 Batch-processing of tikz files now uses tikz2pdf, successfully. 14 years ago
Taha Ahmed 91f655e744 I made a few changes to suit my needs bettter.
Moved template to /common/tex
Added siunitx, mhchem, and related commands to template preamble
Use basename of tikz-file as pdf filename instead of the generic "template"
14 years ago
Taha Ahmed ad16030373 tikz2pdf: python script by Hans Meine. Original version, as downloaded. 14 years ago
Taha Ahmed 01a57a4b92 Removed biber from .gitignore.
Changes to chertex.sh since before, cannot remember what.
14 years ago
Taha Ahmed 2c981eebca Switched from latexmk to R CMD texi2dvi.
The reason was that pgfSweave's caching did not seem to
work properly with latexmk (I suspect latexmk did not
run the externalization commands, which pgfSweave does).
14 years ago
Taha Ahmed 6b68f24a12 Cosmetic changes in chertex. Updated some comments, mainly. 14 years ago
Taha Ahmed 0745dbe501 Initial commit. Files as-is. Currently chertex.sh and simpledelay.sh are most used. 14 years ago