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Changed all absolute paths to so they begin "/media/bay/..."

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master
Taha Ahmed 6 years ago
parent b7d10d9863
commit fdff311703
1 changed files with 17 additions and 17 deletions
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34
chertex.sh
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@ -73,7 +73,7 @@ if [ $# -eq 1 ]; then
# kill Shiny # kill Shiny
pkill -f "shiny::runApp" pkill -f "shiny::runApp"
# start Shiny # start Shiny
bash -c "/home/taha/chepec/chetex/common/bash/shiny-matrix.sh" & bash -c "/media/bay/taha/chepec/chetex/common/bash/shiny-matrix.sh" &
# terminate this script # terminate this script
echo "<cheRTeX> Terminating..." echo "<cheRTeX> Terminating..."
simpledelay.sh 2 simpledelay.sh 2
@ -210,44 +210,44 @@ else
# create a unique tmp-dir name # create a unique tmp-dir name
tmpdirname="${timestamp}-${currdirname}" tmpdirname="${timestamp}-${currdirname}"
# make a directory in chepec/tmp with the name of the current dir # make a directory in chepec/tmp with the name of the current dir
mkdir /home/taha/chepec/tmp/$tmpdirname mkdir /media/bay/taha/chepec/tmp/$tmpdirname
# Copy the contents of the current directory to the tmp/$currdirname directory # Copy the contents of the current directory to the tmp/$currdirname directory
cp * -R /home/taha/chepec/tmp/$tmpdirname cp * -R /media/bay/taha/chepec/tmp/$tmpdirname
# Empty the current directory of all contents # Empty the current directory of all contents
rm * -R # note: hidden files and subdir unaffected rm * -R # note: hidden files and subdir unaffected
# Return the stuff we want to keep after wipe-dir # Return the stuff we want to keep after wipe-dir
# (we are of course assuming that the following 4 file(type)s always exist) # (we are of course assuming that the following 4 file(type)s always exist)
# (if in fact they do not exist, use conditional statements instead (see below) # (if in fact they do not exist, use conditional statements instead (see below)
cp /home/taha/chepec/tmp/$tmpdirname/*.Rnw . cp /media/bay/taha/chepec/tmp/$tmpdirname/*.Rnw .
cp /home/taha/chepec/tmp/$tmpdirname/vc . cp /media/bay/taha/chepec/tmp/$tmpdirname/vc .
cp /home/taha/chepec/tmp/$tmpdirname/vc.tex . cp /media/bay/taha/chepec/tmp/$tmpdirname/vc.tex .
cp /home/taha/chepec/tmp/$tmpdirname/vc-git.awk . cp /media/bay/taha/chepec/tmp/$tmpdirname/vc-git.awk .
## Return stuff that may not always exist (check first...) ## Return stuff that may not always exist (check first...)
## The use of conditionals is mainly to avoid annoying "file does not exist" messages... ## The use of conditionals is mainly to avoid annoying "file does not exist" messages...
# Return *.Rproj file (removal is unnecessary and makes RStudio less useful) # Return *.Rproj file (removal is unnecessary and makes RStudio less useful)
Rprojfiles=`ls -1 /home/taha/chepec/tmp/$tmpdirname/*.Rproj 2>/dev/null | wc -l` Rprojfiles=`ls -1 /media/bay/taha/chepec/tmp/$tmpdirname/*.Rproj 2>/dev/null | wc -l`
if [ $Rprojfiles != 0 ]; then if [ $Rprojfiles != 0 ]; then
cp /home/taha/chepec/tmp/$tmpdirname/*.Rproj . cp /media/bay/taha/chepec/tmp/$tmpdirname/*.Rproj .
fi fi
# Return *.rda files (considering peak-data files, which "cost" a lot to create) # Return *.rda files (considering peak-data files, which "cost" a lot to create)
rdafiles=`ls -1 /home/taha/chepec/tmp/$tmpdirname/*.rda 2>/dev/null | wc -l` rdafiles=`ls -1 /media/bay/taha/chepec/tmp/$tmpdirname/*.rda 2>/dev/null | wc -l`
if [ $rdafiles != 0 ]; then if [ $rdafiles != 0 ]; then
cp /home/taha/chepec/tmp/$tmpdirname/*.rda . cp /media/bay/taha/chepec/tmp/$tmpdirname/*.rda .
fi fi
# Return *.Rmd files (R markdown source files) # Return *.Rmd files (R markdown source files)
Rmdfiles=`ls -1 /home/taha/chepec/tmp/$tmpdirname/*.Rmd 2>/dev/null | wc -l` Rmdfiles=`ls -1 /media/bay/taha/chepec/tmp/$tmpdirname/*.Rmd 2>/dev/null | wc -l`
if [ $Rmdfiles != 0 ]; then if [ $Rmdfiles != 0 ]; then
cp /home/taha/chepec/tmp/$tmpdirname/*.Rmd . cp /media/bay/taha/chepec/tmp/$tmpdirname/*.Rmd .
fi fi
# Return *.css files (css files) [for sample-matrix] # Return *.css files (css files) [for sample-matrix]
cssfiles=`ls -1 /home/taha/chepec/tmp/$tmpdirname/*.css 2>/dev/null | wc -l` cssfiles=`ls -1 /media/bay/taha/chepec/tmp/$tmpdirname/*.css 2>/dev/null | wc -l`
if [ $cssfiles != 0 ]; then if [ $cssfiles != 0 ]; then
cp /home/taha/chepec/tmp/$tmpdirname/*.css . cp /media/bay/taha/chepec/tmp/$tmpdirname/*.css .
fi fi
# Return .knitme file [empty file used to indicate knitr jobs] # Return .knitme file [empty file used to indicate knitr jobs]
knitmefile=`ls -1 /home/taha/chepec/tmp/$tmpdirname/.knitme 2>/dev/null | wc -l` knitmefile=`ls -1 /media/bay/taha/chepec/tmp/$tmpdirname/.knitme 2>/dev/null | wc -l`
if [ $knitmefile != 0 ]; then if [ $knitmefile != 0 ]; then
cp /home/taha/chepec/tmp/$tmpdirname/.knitme . cp /media/bay/taha/chepec/tmp/$tmpdirname/.knitme .
fi fi
fi fi

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