diff --git a/chertex.sh b/chertex.sh index 2b4725a..9ad0bcc 100755 --- a/chertex.sh +++ b/chertex.sh @@ -73,7 +73,7 @@ if [ $# -eq 1 ]; then # kill Shiny pkill -f "shiny::runApp" # start Shiny - bash -c "/home/taha/chepec/chetex/common/bash/shiny-matrix.sh" & + bash -c "/media/bay/taha/chepec/chetex/common/bash/shiny-matrix.sh" & # terminate this script echo " Terminating..." simpledelay.sh 2 @@ -210,44 +210,44 @@ else # create a unique tmp-dir name tmpdirname="${timestamp}-${currdirname}" # make a directory in chepec/tmp with the name of the current dir - mkdir /home/taha/chepec/tmp/$tmpdirname + mkdir /media/bay/taha/chepec/tmp/$tmpdirname # Copy the contents of the current directory to the tmp/$currdirname directory - cp * -R /home/taha/chepec/tmp/$tmpdirname + cp * -R /media/bay/taha/chepec/tmp/$tmpdirname # Empty the current directory of all contents rm * -R # note: hidden files and subdir unaffected # Return the stuff we want to keep after wipe-dir # (we are of course assuming that the following 4 file(type)s always exist) # (if in fact they do not exist, use conditional statements instead (see below) - cp /home/taha/chepec/tmp/$tmpdirname/*.Rnw . - cp /home/taha/chepec/tmp/$tmpdirname/vc . - cp /home/taha/chepec/tmp/$tmpdirname/vc.tex . - cp /home/taha/chepec/tmp/$tmpdirname/vc-git.awk . + cp /media/bay/taha/chepec/tmp/$tmpdirname/*.Rnw . + cp /media/bay/taha/chepec/tmp/$tmpdirname/vc . + cp /media/bay/taha/chepec/tmp/$tmpdirname/vc.tex . + cp /media/bay/taha/chepec/tmp/$tmpdirname/vc-git.awk . ## Return stuff that may not always exist (check first...) ## The use of conditionals is mainly to avoid annoying "file does not exist" messages... # Return *.Rproj file (removal is unnecessary and makes RStudio less useful) - Rprojfiles=`ls -1 /home/taha/chepec/tmp/$tmpdirname/*.Rproj 2>/dev/null | wc -l` + Rprojfiles=`ls -1 /media/bay/taha/chepec/tmp/$tmpdirname/*.Rproj 2>/dev/null | wc -l` if [ $Rprojfiles != 0 ]; then - cp /home/taha/chepec/tmp/$tmpdirname/*.Rproj . + cp /media/bay/taha/chepec/tmp/$tmpdirname/*.Rproj . fi # Return *.rda files (considering peak-data files, which "cost" a lot to create) - rdafiles=`ls -1 /home/taha/chepec/tmp/$tmpdirname/*.rda 2>/dev/null | wc -l` + rdafiles=`ls -1 /media/bay/taha/chepec/tmp/$tmpdirname/*.rda 2>/dev/null | wc -l` if [ $rdafiles != 0 ]; then - cp /home/taha/chepec/tmp/$tmpdirname/*.rda . + cp /media/bay/taha/chepec/tmp/$tmpdirname/*.rda . fi # Return *.Rmd files (R markdown source files) - Rmdfiles=`ls -1 /home/taha/chepec/tmp/$tmpdirname/*.Rmd 2>/dev/null | wc -l` + Rmdfiles=`ls -1 /media/bay/taha/chepec/tmp/$tmpdirname/*.Rmd 2>/dev/null | wc -l` if [ $Rmdfiles != 0 ]; then - cp /home/taha/chepec/tmp/$tmpdirname/*.Rmd . + cp /media/bay/taha/chepec/tmp/$tmpdirname/*.Rmd . fi # Return *.css files (css files) [for sample-matrix] - cssfiles=`ls -1 /home/taha/chepec/tmp/$tmpdirname/*.css 2>/dev/null | wc -l` + cssfiles=`ls -1 /media/bay/taha/chepec/tmp/$tmpdirname/*.css 2>/dev/null | wc -l` if [ $cssfiles != 0 ]; then - cp /home/taha/chepec/tmp/$tmpdirname/*.css . + cp /media/bay/taha/chepec/tmp/$tmpdirname/*.css . fi # Return .knitme file [empty file used to indicate knitr jobs] - knitmefile=`ls -1 /home/taha/chepec/tmp/$tmpdirname/.knitme 2>/dev/null | wc -l` + knitmefile=`ls -1 /media/bay/taha/chepec/tmp/$tmpdirname/.knitme 2>/dev/null | wc -l` if [ $knitmefile != 0 ]; then - cp /home/taha/chepec/tmp/$tmpdirname/.knitme . + cp /media/bay/taha/chepec/tmp/$tmpdirname/.knitme . fi fi