Cosmetic changes, should improve UX a little

chertex.sh

@@ -69,9 +69,9 @@ if [ $# -eq 1 ]; then
 	#### Special treatment for sample-matrix.Rnw
    # If $jobname is sample-matrix, restart Shiny and term this script
    if [[ $jobname == "sample-matrix" ]]; then
-	   echo "<cheRTeX> -------------------------------"
-      echo "<cheRTeX> sample-matrix: restarting Shiny"
-      echo "<cheRTeX> -------------------------------"
+	   echo "<sample-matrix> -------------------------------"
+      echo "<sample-matrix> Restarting Shiny"
+      echo "<sample-matrix> -------------------------------"
 
       # kill Shiny
       pkill -f "shiny::runApp"
@@ -86,9 +86,9 @@ if [ $# -eq 1 ]; then
 	#### Special treatment for thesis
 	# If $jobname is thesis, fetch some external assets
    if [[ ${PWD} ==  "/media/bay/taha/chepec/thesis" && $jobname == "thesis" ]]; then
-      echo "<cheRTeX> -------------------------------"
-      echo "<cheRTeX> THESIS: getting external assets"
-      echo "<cheRTeX> -------------------------------"
+      echo "<thesis> -------------------------------"
+      echo "<thesis> Getting external assets"
+      echo "<thesis> -------------------------------"
 		# summary of operations in this if-clause:
       # trawl the assets/ subdirectories looking for a file "external.assets", if found,
       # read its contents line-by-line (each line is a path) and copy that file to the current assets/ subdir