Added *.Rmd files to the set of returned files after directory wipe (option 3).

chertex.sh

@@ -177,11 +177,14 @@ else
          # Empty the current directory of all contents
          rm * -R # note: hidden files and subdir unaffected
          # Return the stuff we want to keep after wipe-dir
+         # (we are of course assuming that the following 4 file(type)s always exist)
+         # (if in fact they do not exist, use conditional statements instead (see below)
          cp /home/taha/chepec/tmp/$tmpdirname/*.Rnw .
          cp /home/taha/chepec/tmp/$tmpdirname/vc .
          cp /home/taha/chepec/tmp/$tmpdirname/vc.tex .
          cp /home/taha/chepec/tmp/$tmpdirname/vc-git.awk .
-         # Return stuff that may not always exist (check first...)
+         ## Return stuff that may not always exist (check first...)
+         ## The use of conditionals is mainly to avoid annoying "file does not exist" messages...
          # Return *.Rproj file (removal is unnecessary and makes RStudio less useful)
          Rprojfiles=`ls -1 /home/taha/chepec/tmp/$tmpdirname/*.Rproj 2>/dev/null | wc -l`
          if [ $Rprojfiles != 0 ]; then 
@@ -192,6 +195,11 @@ else
          if [ $rdafiles != 0 ]; then 
             cp /home/taha/chepec/tmp/$tmpdirname/*.rda .
          fi
+         # Return *.Rmd files (R markdown source files)
+         Rmdfiles=`ls -1 /home/taha/chepec/tmp/$tmpdirname/*.Rmd 2>/dev/null | wc -l`
+         if [ $Rmdfiles != 0 ]; then 
+            cp /home/taha/chepec/tmp/$tmpdirname/*.Rmd .
+         fi
       fi
 
 		echo "Terminating..."