Fixed a bug: path_thesis should be path_wd.

+ gave the die() function a way to customise the sleep duration
  (allows the clean-up step to terminate immediately without waiting),
  and removed its unused exit-code argument.

chertex.sh

@@ -48,15 +48,18 @@ msg() {
   echo >&2 -e "${1-}"
 }
 
-# examples:
-# die "Some message (exiting with status 1)"
-# die "Some message (exiting with status -->)" 0 # this is not working
+# Examples:
+# die "some message"
+# die "some message and wait 6 seconds before exiting" 6
+# die "some message and exit immediately" 0
 die() {
   local msg=$1
-  local code=${2-1} # default exit status 1
   msg "$msg"
-  simpledelay.sh 2 # short delay to aid reading last message in case terminal closes on exit
-  exit "$code"
+  # short delay to aid reading last message in case terminal closes on exit
+  # if $2 was provided, set it as delay
+  # if $2 is unset or null, use a 3 second delay
+  simpledelay.sh ${2:-3}
+  exit 0
 }
 
 parse_params() {
@@ -226,10 +229,12 @@ if [[ $show_menu == "false" ]]; then
             msg "<thesis> Copying $asset to $assetpathtarget"
             # cp but don't overwrite existing files
             cp --preserve=timestamps --no-clobber --recursive $asset $assetpathtarget
-            # except we want to overwrite the BibTeX library files (inside the assets/references/ directory), we'll do that by checking the target dirname and only running the destructive cp operation if its "references"
+            # except we want to overwrite the biblatex library file (inside the assets/references/ directory)
+            # as well as the zotero.sqlite file, we'll do that by checking the target dirname and only run
+            # the copy operation (which will overwrite stuff) if it is "references"
             assetdirnametarget=$(basename "$assetpathtarget")
             if [[ $assetdirnametarget == "references" ]]; then
-               msg "<thesis> Overwriting BibTeX libraries in assets/references/"
+               msg "<thesis> Overwriting Zotero biblatex library and database in assets/references/"
                cp --preserve=timestamps $asset $assetpathtarget
             fi
          done < "$externalfilepath"
@@ -380,7 +385,7 @@ else
       # acn|acr|alg|aux|bbl|blg|dep|dpth|fdb.*|figlist|fls|glg|glo|gls.*|ist|lob|lof|log|lol|lor|los|lot|maf|out|lox|makefile|map|mtc.*|run.*|slg|slo|sls|stc.*|*-tikzDictionary|tdo|toc|xdy
       auxregex=$(echo "$auxfiles" | sed -r "s/\*[\.-]//g" | sed -r "s/\* /\.\* /g" | sed -r "s/ /|/g")
       # "rm -v" provides nice output of which files were cleaned up
-      find "$path_thesis" -maxdepth 1 -type f -regextype posix-extended -iregex ".*\.($auxregex)" -exec rm -v "{}" \;
+      cd "$path_wd" && find . -maxdepth 1 -type f -regextype posix-extended -iregex ".*\.($auxregex)" -exec rm -v "{}" \; && cd $OLDPWD
    fi
    if [[ $usrchoice == "wipe-dir" || $usrchoice == "3" ]]; then
       msg "<3> 'wipe-dir' chosen"
@@ -431,7 +436,7 @@ else
       fi
    fi
 
-   die "All done. Exiting..."
+   die "All done. Exiting..." 0
 fi