Initial commit. Files as-is. Currently chertex.sh and simpledelay.sh are most used.
Taha Ahmed
14 years ago
commit
0745dbe501
@ -0,0 +1,4 @@
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biber
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pdfcrop
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unborn/
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documentation/
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#!/bin/bash
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# Umbrella function to simplify use of pdftk
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# Created April 20, 2010
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# Taha Ahmed, taha@chepec.se
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# **************************
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# Usage:
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# ARG 1: filename of pdf, e.g., 'oxides.pdf'
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# ARG 2: specify operation,
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# - 'dump_data' --> writes metadata to $reportfile in current directory
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# ARG 3: used when updating metadata, specifies the input text file
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# $* Stores all the arguments that were entered on the command line ($1 $2 ...).
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# $@ Stores all the arguments that were entered on the command line, individually quoted ("$1" "$2" ...).
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# -o is logical OR - can be evaluated within single brackets
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# -a is logical AND - can be evaluated within single brackets
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#############################################################
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## Original pdftk syntax
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## *********************
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## Dump metadata to file
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#= pdftk <in.pdf> dump_data output <$reportfile>
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## Update metadata from file
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#= pdftk <in.pdf> update_info <$reportfile> output <out.pdf>
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#############################################################
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# Perhaps good to save original PDF
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# Could be nice to be able to input metadata updates directly at the bash prompt, something like
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# First, script displays current fields
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# echo Which field do you want to update/create?
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# echo <Display choice as a list>
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# read choice newfieldinfo
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# do the whole pdftk update stuff
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# voila!
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#set -x # for debugging
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NAME=$(basename $0)
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echo "***********************************************************"
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echo "This is $NAME. Write $NAME -h for help."
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# Set defaults
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DUMPMETADATA=yes # default action
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UPDATEMETADATA=no
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# Set filetypes
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pdfext=".pdf"
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metadataext=".pdfmeta"
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usage () {
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cat <<EOF
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NAME
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$NAME - Wraps pdftk in a personalised run environment.
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SYNOPSIS
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$NAME [OPTION], or
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$NAME [FILENAME.PDF]
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DESCRIPTION
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The following options can be used:
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-h, --help
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Displays this help text.
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If no option nor filename is specified, the script defaults to
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dumping metadata information for all PDF files present in the
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current directory into *.pdfmeta files, one for each PDF.
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If no PDF files are present in the current directory, the script
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exits without taking any further action.
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DETAILS
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EXAMPLE
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Extract metadata for all PDFs in directory and dump into separate files
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$NAME -a
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Default usage - dump PDF metadata in <filename>.pdfmeta
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$NAME <filename>.pdf
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AUTHOR
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Taha Ahmed <taha.ahmed at mkem.uu.se>
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EOF
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}
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OPTIONS=$@
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for OPTION in "$@"; do
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case "$OPTION" in
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-h | --help )
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usage
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exit 0
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;;
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-a | --all )
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# Perform default action on all PDFs in current directory
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;;
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* ) # no options, just run with default settings
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;;
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esac
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done
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FILES=$OPTIONS
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# Check if no input files were given
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if [ ! -n "$FILES" ]; then
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# Perhaps do default action for all pdf files in current directory?
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echo -e "\nError: There is no input files! Usage is:\n"
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usage
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exit 1
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fi
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# Check file types (pre-assumes a file extension exists)
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for FILE in "$FILES"; do
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PDFFILE=$(echo $FILE | grep '.[Pp][Dd][Ff]$')
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TEXFILE=$(echo $FILE | grep '.[Tt][Ee][Xx]$')
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if [ ! -n "$PDFFILE" -a ! -n "$TEXFILE" ]; then
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echo "$FILE is not a supported file type!"
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echo "It should be one of: .pdf or .tex"
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exit 1
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fi
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NEWFILES="$NEWFILES $FILE"
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unset PDFFILE TEXFILE
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done
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FILES=$NEWFILES
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# Execution
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for FILE in "$FILES"; do
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# Metadata filename is pdf basename plus .pdfmeta extension
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METADATAFILE=${FILE%.*}$metadataext # metadata filename
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if [ "$DUMPMETADATA" = "yes" ]; then
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#echo "pdftk $FILE dump_data output $METADATAFILE"
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## It seems pdftk has problems dealing with spaces in filenames or paths.
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## Possible work-arounds:
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## Escape spaces with back-slashes?
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## Check for spaces in filename, if present, copy to temporary file without spaces,
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## then run call pdftk, then rename again...
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pdftk $FILE dump_data output $METADATAFILE
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fi
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done
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exit 0
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### STUFF BELOW IS OLD
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reportfile=./chepdftk-report.txt
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# Check number of args supplied
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if [ $# -eq 0 ]; then
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# Zero arguments
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echo No arguments given.
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exit
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else
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# Some arguments were passed.
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if [ $# -eq 1 ]; then
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# One argument was passed
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echo One argument.
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else
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# More than one argument
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if [ $# -eq 2 ]; then
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# Two arguments were passed
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echo Two arguments.
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if [ $2 == "dump_data" ]; then
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pdftk $1 $2 output $reportfile
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fi
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else
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# More than two arguments
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if [ $# -eq 3 ]; then
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# Three arguments were passed
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echo Three arguments.
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else
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# More than three arguments
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echo More than three arguments. Too many.
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fi
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fi
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fi
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fi
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#!/bin/bash
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## Process *.Rnw files
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## Written May 14, 2010
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## Taha Ahmed
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####################################################
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# For now, MAKE SURE that the argument consists of
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# a complete filename, with extension, and
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# in the directory of the Rnw file
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####################################################
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clear
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echo "---------------------------------------------------------------"
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echo "cheRTeX -- a script for processing R-Sweave-LaTeX-TikZ projects"
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echo "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^"
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echo "MMX -- taha.ahmed@mkem.uu.se -- CHEPEC doctoral degree project"
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echo "---------------------------------------------------------------"
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Rfiletype="R"
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TeXfiletype="tex"
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tikzfiles="*.tikz"
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Rnwfiles="*.Rnw"
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if [ $# -eq 1 ]; then
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# Check if the argument contains a filetype
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# Assumes a complete filename was passed
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jobfilename=$1
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jobfiletype=${jobfilename#*.} # File extension
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jobname=${jobfilename%.*} # Filename without extension part
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echo "<cheRTeX> Detected filename: " $jobname
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echo "<cheRTeX> Detected extension:" $jobfiletype
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# Verifying that the file extension is *.Rnw
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if [[ $jobfiletype == "Rnw" || $jobfiletype == "rnw" || $jobfiletype == "RNW" ]]; then
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# File extension is *.Rnw
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echo "<cheRTeX> Detected *.Rnw extension"
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jobfiletype="Rnw"
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else
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# File extension is not *.Rnw
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echo "<cheRTeX> File extension should be *.Rnw"
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echo "<cheRTeX> Terminating..."
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exit 1
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fi
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# Introducing a short delay to enable on-screen reading of previous echo
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simpledelay.sh 2
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echo "Delay completed"
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# Tangle
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echo "<cheRTeX> Tangling..."
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R CMD Stangle $jobname.$jobfiletype
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# Weave
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echo "<cheRTeX> Weaving..."
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R CMD pgfsweave --graphics-only $jobname.$jobfiletype
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# Introduce delay to give time to read R CMD exit status
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echo "<cheRTeX> -------------------------"
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echo "<cheRTeX> R CMD pgfsweave completed"
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echo "<cheRTeX> -------------------------"
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simpledelay.sh 5
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# Run vc script if vc exists in working directory
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echo "<cheRTeX> Running vc script"
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if [ -f vc ]; then
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./vc
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fi
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# Run pdflatex, bibtex, and company
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echo "<cheRTeX> Calling LaTeXMK"
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latexmk $jobname -pdf -bibtex
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# Don't bother with this. Let latexmk take care of cleaning up
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# Move unnecessary auxiliary files generated
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#echo "<cheRTeX> _________________________"
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#echo "<cheRTeX> ========================="
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#echo "<cheRTeX> Moving auxiliary files..."
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#mv *.aux logs
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#mv *.log logs
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#mv *.out logs
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else
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# Either no arguments, or more than one argument
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if [ $# -eq 0 ]; then
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# Zero arguments. Present a menu of choices
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echo "This is cheRTeX POST-PROCESSING" # only one choice for now
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echo "<1> 'pdf-all' -- Process all .tikz files to pdf graphics"
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echo "Any other input exits the program"
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read usrchoice
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# Determine number of .Rnw files in current directory
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Rnwfileno=$(ls -1 $Rnwfiles | wc -l)
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echo "No of .Rnw files: $Rnwfileno"
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||||||
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# Check if number of .Rnw files larger than one
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if [ $Rnwfileno -gt 1 ]; then
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# If larger than one, ask for user input
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# Indicates more than one Rnw file in current directory.
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# This introduces a naming ambiguity.
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|
# Resolve by asking user for current jobname
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||||||
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echo "Found $Rnwfileno .Rnw files in current directory"
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echo "Please specify the jobname"
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read jobname
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|
if [ -z "$jobname" ]; then
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# string is null
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||||||
|
echo "Specified jobname cannot be parsed. Terminating..."
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|
exit 1
|
||||||
|
fi
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|
else
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|
# Else, fetch the jobname from the .Rnw filename by stripping file extension
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Rnwfilename=$(ls -1 $Rnwfiles)
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|
jobname=${Rnwfilename%.*}
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||||||
|
fi
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|
|
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|
echo "Jobname set to: $jobname"
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|
|
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|
if [[ $usrchoice == "pdf-all" || $usrchoice == "1" ]]; then
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|
echo "<1> 'pdf-all' chosen"
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|
# This for loop ONLY USED to determine number of *.tikz files in directory
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||||||
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for tikzfiles in "$tikzfiles"; do tikzfilenumber=${#tikzfiles}; done
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echo "cheRTeX detected $tikzfilenumber TikZ files for processing"
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||||||
|
echo "Starting TikZ file processing..."
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||||||
|
simpledelay.sh 2
|
||||||
|
|
||||||
|
for tikzfilename in $tikzfiles; do
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# Remove the file extension
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||||||
|
tikzlabel=${tikzfilename%.*}
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||||||
|
# Call pdfLaTeX with tikz label as jobname # See TiKZ manual section 63 for more details
|
||||||
|
echo "Executing <pdflatex --jobname=$tikzlabel $jobname.$TeXfiletype>"
|
||||||
|
pdflatex --jobname=$tikzlabel $jobname.$TeXfiletype
|
||||||
|
done
|
||||||
|
echo "Completed TikZ file processing"
|
||||||
|
fi
|
||||||
|
echo "Terminating..."
|
||||||
|
|
||||||
|
mv $jobname-*.pdf tikz-pdfs
|
||||||
|
mv *.aux logs
|
||||||
|
mv *.log logs
|
||||||
|
mv *.out logs
|
||||||
|
|
||||||
|
exit 1
|
||||||
|
fi
|
||||||
|
|
||||||
|
echo "<cheRTeX> This script can be run with one argument is process mode,"
|
||||||
|
echo "<cheRTeX> or with zero arguments in post-processing mode."
|
||||||
|
echo "<cheRTeX> Terminating..."
|
||||||
|
exit 1
|
||||||
|
fi
|
||||||
|
|
||||||
|
exit 1
|
||||||
@ -0,0 +1,50 @@
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|||||||
|
#!/bin/bash
|
||||||
|
## This is a shell for running pdflatex and bibtex on TeX files.
|
||||||
|
## Written Apr 29, 2010
|
||||||
|
## Taha Ahmed
|
||||||
|
|
||||||
|
#####
|
||||||
|
## Supply the filename argument without file extension!
|
||||||
|
|
||||||
|
if [ $# -gt 2 ]; then
|
||||||
|
# More than two arguments
|
||||||
|
echo More than two arguments. Too many!
|
||||||
|
exit
|
||||||
|
else
|
||||||
|
# Two or less arguments
|
||||||
|
if [ $# -eq 2 ]; then
|
||||||
|
# Exactly two arguments
|
||||||
|
# First argument should be jobname
|
||||||
|
jobname=$1
|
||||||
|
# Test second argument
|
||||||
|
if [ $2 == "-bib" ]; then
|
||||||
|
BibliographyRequired=1
|
||||||
|
fi
|
||||||
|
if [ $2 == "-biber" ]; then
|
||||||
|
BiberRequired=1
|
||||||
|
fi
|
||||||
|
else
|
||||||
|
if [ $# -eq 1 ]; then
|
||||||
|
# Only one argument
|
||||||
|
# Argument specifies the jobname
|
||||||
|
jobname=$1
|
||||||
|
# Set BibliographyRequired to false
|
||||||
|
BibliographyRequired=0
|
||||||
|
else
|
||||||
|
# No arguments submitted
|
||||||
|
# No use right now
|
||||||
|
echo No arguments submitted.
|
||||||
|
exit
|
||||||
|
fi
|
||||||
|
fi
|
||||||
|
fi
|
||||||
|
|
||||||
|
pdflatex $jobname
|
||||||
|
if [ $BibliographyRequired ]; then
|
||||||
|
bibtex $jobname
|
||||||
|
fi
|
||||||
|
if [ $BiberRequired ]; then
|
||||||
|
biber $jobname
|
||||||
|
fi
|
||||||
|
pdflatex $jobname
|
||||||
|
pdflatex $jobname
|
||||||
@ -0,0 +1,87 @@
|
|||||||
|
#!/bin/bash
|
||||||
|
# Using two digits the represent the value being counted down
|
||||||
|
# Two-digits set in decimal representation used by printf
|
||||||
|
# Usage: 'countdown #delay #style'
|
||||||
|
# Delay is an integer from 1 to 99 (what happens if zero?)
|
||||||
|
# Style is a string, either "numbers" or "style"
|
||||||
|
# Arguments should always be given in that order
|
||||||
|
# Both arguments may be omitted, in that case delay defaults to ten seconds and style to "numbers"
|
||||||
|
|
||||||
|
defaultdelay=10
|
||||||
|
numberstyle="numbers"
|
||||||
|
symbolstyle="symbols"
|
||||||
|
defaultstyle=$numberstyle
|
||||||
|
|
||||||
|
if [ $# -gt 2 ]; then
|
||||||
|
# More than two arguments
|
||||||
|
echo Too many arguments
|
||||||
|
exit
|
||||||
|
else
|
||||||
|
# Two or less arguments
|
||||||
|
if [ $# -eq 2 ]; then
|
||||||
|
# Exactly two arguments
|
||||||
|
# First argument should specify the delay
|
||||||
|
delaysecs=$1
|
||||||
|
# Second argument should specify the display style
|
||||||
|
style=$2
|
||||||
|
else
|
||||||
|
if [ $# -eq 1 ]; then
|
||||||
|
# Only one argument
|
||||||
|
# Argument specifies the delay
|
||||||
|
delaysecs=$1
|
||||||
|
# Style defaults to "numbers"
|
||||||
|
style="numbers"
|
||||||
|
else
|
||||||
|
# No arguments submitted
|
||||||
|
# Delay defaults
|
||||||
|
delaysecs=$defaultdelay
|
||||||
|
# Style defaults
|
||||||
|
style=$defaultstyle
|
||||||
|
fi
|
||||||
|
fi
|
||||||
|
fi
|
||||||
|
|
||||||
|
# Adjustment by one second
|
||||||
|
#delaysecs=$[$delaysecs-1]
|
||||||
|
delaystatic=$delaysecs
|
||||||
|
|
||||||
|
if [ $style == $numberstyle ]; then
|
||||||
|
while [ $delaysecs -gt 0 ]
|
||||||
|
do
|
||||||
|
sleep 1 &
|
||||||
|
printf "\r"
|
||||||
|
# Text before counter
|
||||||
|
printf "Stand by... "
|
||||||
|
printf "%02d" $[delaysecs]
|
||||||
|
delaysecs=$[$delaysecs-1]
|
||||||
|
wait
|
||||||
|
done
|
||||||
|
# Printing the zero (end of count-down)
|
||||||
|
printf "\b\b"
|
||||||
|
printf "%02d" $[delaysecs]
|
||||||
|
printf " - Done!"
|
||||||
|
echo
|
||||||
|
else
|
||||||
|
# style is symbolstyle
|
||||||
|
printf -v line '%*s' "$delaysecs"
|
||||||
|
printf "%s\r" "${line// /#}"
|
||||||
|
while [ $delaysecs -gt 0 ]
|
||||||
|
do
|
||||||
|
sleep 1 &
|
||||||
|
printf "+"
|
||||||
|
delaysecs=$[$delaysecs-1]
|
||||||
|
wait
|
||||||
|
done
|
||||||
|
#printf "\b "
|
||||||
|
echo
|
||||||
|
fi
|
||||||
|
|
||||||
|
|
||||||
|
# Bash quoting with ANSI-C style
|
||||||
|
# \b - backspace
|
||||||
|
# \r - carriage return
|
||||||
|
# \n - newline
|
||||||
|
# \f - form-feed
|
||||||
|
# \t - horizontal tabulator
|
||||||
|
# \v - vertical tabulator
|
||||||
|
# http://bash-hackers.org/wiki/doku.php/commands/builtin/printf
|
||||||
@ -0,0 +1,40 @@
|
|||||||
|
#!/bin/bash
|
||||||
|
## Taha Ahmed, Sep 16, 2010
|
||||||
|
|
||||||
|
## For making PDF from LaTeX file that uses PSTricks,
|
||||||
|
## also fixing correct page size using the preview package.
|
||||||
|
|
||||||
|
####################################################
|
||||||
|
# Required argument:
|
||||||
|
# Filename (WITHOUT FILE EXTENSION)
|
||||||
|
####################################################
|
||||||
|
|
||||||
|
##############
|
||||||
|
# Runs
|
||||||
|
# latex
|
||||||
|
# dvips
|
||||||
|
# ps2pdf
|
||||||
|
##############
|
||||||
|
|
||||||
|
|
||||||
|
clear
|
||||||
|
echo "Runs latex, dvips, ps2eps, epstopdf"
|
||||||
|
|
||||||
|
latex $1.tex
|
||||||
|
echo "==============="
|
||||||
|
echo "latex $1.tex"
|
||||||
|
echo "==============="
|
||||||
|
simpledelay.sh 2
|
||||||
|
|
||||||
|
dvips $1.dvi
|
||||||
|
echo "==============="
|
||||||
|
echo "dvips $1.dvi"
|
||||||
|
echo "==============="
|
||||||
|
simpledelay.sh 2
|
||||||
|
|
||||||
|
ps2pdf $1.ps
|
||||||
|
echo "==============="
|
||||||
|
echo "ps2pdf $1.ps"
|
||||||
|
echo "==============="
|
||||||
|
|
||||||
|
exit 1
|
||||||
@ -0,0 +1,36 @@
|
|||||||
|
#!/bin/bash
|
||||||
|
# Arbitrary delay
|
||||||
|
|
||||||
|
# simpledelay.sh <arg>
|
||||||
|
# <arg> is an integer value and specifies the delay interval in seconds
|
||||||
|
|
||||||
|
minint=0 # mininum delay
|
||||||
|
maxint=15 # maximum delay
|
||||||
|
|
||||||
|
# Check that only one argument has been submitted
|
||||||
|
if [ $# -eq 1 ]; then
|
||||||
|
# Check that the argument is an integer and in the valid range
|
||||||
|
if [ $1 ]; then
|
||||||
|
if [ ! $(echo "$1" | grep -E "^[0-9]+$") ]; then
|
||||||
|
echo $1 is not a valid integer.
|
||||||
|
exit 1
|
||||||
|
else
|
||||||
|
if ! [ $1 -ge $minint ] || ! [ $1 -le $maxint ]; then
|
||||||
|
echo $1 is an invalid value. Range is [$minint-$maxint]
|
||||||
|
exit 1
|
||||||
|
fi
|
||||||
|
fi
|
||||||
|
fi
|
||||||
|
else
|
||||||
|
# No args or more than one submitted
|
||||||
|
echo "<simpledelay.sh> Not a valid numbers of arguments. Only one argument allowed."
|
||||||
|
exit 1
|
||||||
|
fi
|
||||||
|
|
||||||
|
# Execute the delay
|
||||||
|
delaysecs=$1
|
||||||
|
while [ $delaysecs -gt 0 ]; do
|
||||||
|
sleep 1 &
|
||||||
|
delaysecs=$[$delaysecs-1]
|
||||||
|
wait
|
||||||
|
done
|
||||||
Loading…
Reference in New Issue