Compare commits
8 Commits
44ff1cfdc1
...
687379932f
| Author | SHA1 | Date |
|---|---|---|
 Taha Ahmed
|
687379932f | 8 months ago |
|
Taha Ahmed
|
d587da571a | 8 months ago |
|
Taha Ahmed
|
205c8a8afe | 10 months ago |
|
Taha Ahmed
|
5a73e3e49d | 11 months ago |
|
Taha Ahmed
|
c965437a0f | 11 months ago |
|
Taha Ahmed
|
51e2ca725b | 1 year ago |
|
Taha Ahmed
|
7ef254dd69 | 1 year ago |
|
Taha Ahmed
|
688c7404ef | 1 year ago |
@ -0,0 +1,189 @@
|
||||
#!/usr/bin/env bash
|
||||
# solarchemist
|
||||
# GPL3 2023
|
||||
|
||||
set -euo pipefail
|
||||
|
||||
usage() {
|
||||
cat <<EOF
|
||||
Usage: $(basename "${BASH_SOURCE[0]}") <flags>
|
||||
|
||||
Compiles Markdown manuscript and SI to PDF, and optionally converts it to HTML,
|
||||
ODT, and/or DOCX.
|
||||
Requires .mdtemplates file to exist in the current working directory.
|
||||
|
||||
Available flags:
|
||||
+ --help --> display this usage guide
|
||||
+ --convert-all --> convert to HTML, ODT, or other formats
|
||||
+ --convert-html --> convert to HTML
|
||||
EOF
|
||||
exit
|
||||
}
|
||||
|
||||
msg() {
|
||||
echo >&2 -e "${1-}"
|
||||
}
|
||||
|
||||
# Examples:
|
||||
# die "some message"
|
||||
# die "some message and wait 6 seconds before exiting" 6
|
||||
# die "some message and exit immediately" 0
|
||||
die() {
|
||||
local msg=$1
|
||||
msg "$msg"
|
||||
# short delay to aid reading last message in case terminal closes on exit
|
||||
# if $2 was provided, set it as delay
|
||||
# if $2 is unset or null, use a 3 second delay
|
||||
simpledelay.sh ${2:-3}
|
||||
exit 0
|
||||
}
|
||||
|
||||
parse_params() {
|
||||
while :; do
|
||||
case "${1-}" in
|
||||
-h | --help) usage ;;
|
||||
-v | --verbose) set -x ;;
|
||||
--convert-all) convert_formats=true ;;
|
||||
--convert-html) convert_html=true ;;
|
||||
--paper) only_paper=true;;
|
||||
--si) only_si=true;;
|
||||
-?*) die "Unknown option: $1" ;;
|
||||
*) break ;;
|
||||
esac
|
||||
shift
|
||||
done
|
||||
return 0
|
||||
}
|
||||
|
||||
convert_formats=false
|
||||
convert_html=false
|
||||
only_paper=false
|
||||
only_si=false
|
||||
parse_params "$@"
|
||||
|
||||
|
||||
# https://ostechnix.com/bash-associative-array
|
||||
# https://phoenixnap.com/kb/bash-associative-array
|
||||
# I expect .mdtemplates to look like this:
|
||||
# (note the use of "keys" named "paper" and "si", these key names should always be paper/si)
|
||||
# ```
|
||||
# $ cat .mdtemplates
|
||||
# declare -A MANUSCRIPT=( ["paper"]="templates/pmichaillat.latex", ["si"]="templates/pmichaillat-si.latex" )
|
||||
# ```
|
||||
# so if your main manuscript is named something other than "paper", just adjust accordingly in your .mdtemplates
|
||||
# and ditto for the relative path to your latex template file markdown should use.
|
||||
|
||||
msg "--- Looking for .mdtemplates"
|
||||
if [ -e .mdtemplates ]; then
|
||||
msg "--- Found in .mdtemplates:"
|
||||
# https://stackoverflow.com/a/4685432/1198249
|
||||
source ./.mdtemplates
|
||||
for M in "${!MANUSCRIPT[@]}"; do
|
||||
echo " ${M}: ${MANUSCRIPT[${M}]}"
|
||||
done
|
||||
else
|
||||
die "Found no .mdtemplates file. Quitting..." 0
|
||||
# for later, add the ability define the array as arg to the --paper and --si flags
|
||||
fi
|
||||
|
||||
|
||||
if [[ $only_paper == "true" ]]; then
|
||||
# msg "Detected --paper flag"
|
||||
declare -A MANUSCRIPT_PAPER
|
||||
MANUSCRIPT_PAPER["paper"]=${MANUSCRIPT["paper"]}
|
||||
unset MANUSCRIPT
|
||||
declare -A MANUSCRIPT
|
||||
MANUSCRIPT["paper"]=${MANUSCRIPT_PAPER["paper"]}
|
||||
# declare -a MANUSCRIPT_TEMPLATES=( "templates/pmichaillat.latex" )
|
||||
fi
|
||||
|
||||
|
||||
if [[ $only_si == "true" ]]; then
|
||||
# msg "Detected --si flag"
|
||||
declare -A MANUSCRIPT_SI
|
||||
# in this assignment we lose the "si" key, gets replaced by integer
|
||||
# declare -a MANUSCRIPT_SI=${MANUSCRIPT["si"]}
|
||||
# we effectively need to build a new array from the old
|
||||
# https://unix.stackexchange.com/a/464627/411416
|
||||
MANUSCRIPT_SI["si"]=${MANUSCRIPT["si"]}
|
||||
# echo "${MANUSCRIPT_SI[@]}"
|
||||
# echo "${!MANUSCRIPT_SI[@]}"
|
||||
# echo "${#MANUSCRIPT_SI[@]}"
|
||||
# simpledelay.sh 10
|
||||
unset MANUSCRIPT
|
||||
declare -A MANUSCRIPT
|
||||
MANUSCRIPT["si"]=${MANUSCRIPT_SI["si"]}
|
||||
# declare -a MANUSCRIPT_TEMPLATES=( "templates/pmichaillat-si.latex" )
|
||||
fi
|
||||
|
||||
|
||||
# echo "${MANUSCRIPT[@]}"
|
||||
# echo "${!MANUSCRIPT[@]}"
|
||||
# echo "${#MANUSCRIPT[@]}"
|
||||
# simpledelay.sh 15
|
||||
|
||||
|
||||
# NOTE "templates/" is hard-coded here!
|
||||
# note the colons (same function as in $PATH), they are important
|
||||
export TEXINPUTS=.:${PWD}/templates/:
|
||||
|
||||
# these are just strings
|
||||
BIBLIOGRAPHIES="--bibliography ./refmngr/zotero.bib --bibliography ./references.bib"
|
||||
PANDOC=pandoc
|
||||
LATEXMK=latexmk
|
||||
|
||||
bibtex_zotero="/media/bay/taha/chepec/literature/_refmngr/_bibrep/library.bib"
|
||||
if [ -f "$bibtex_zotero" ]; then
|
||||
msg "Updating the local copy of Zotero library.bib"
|
||||
cp $bibtex_zotero ./refmngr/zotero.bib
|
||||
fi
|
||||
|
||||
# for some reason, *.aux file is messing up the subsequent run (but not the first run):
|
||||
# /paper.aux:224: Undefined control sequence. l.224 \BibFileName[0]{paper.html}
|
||||
# rm -f *.aux
|
||||
|
||||
|
||||
# note the exclamation mark in the for loop variable, makes it the loop index
|
||||
# https://stackoverflow.com/a/51794732/1198249
|
||||
for M in "${!MANUSCRIPT[@]}"; do
|
||||
# array key (manuscript name)
|
||||
manuscript="${M}"
|
||||
# array value (template path)
|
||||
template="${MANUSCRIPT[${M}]}"
|
||||
|
||||
# The --biblatex option is not for use with the --citeproc option or with PDF output
|
||||
# https://pandoc.org/MANUAL.html#citation-rendering
|
||||
msg "pandoc $manuscript.md to TeX"
|
||||
# https://unix.stackexchange.com/questions/278502/accessing-array-index-variable-from-bash-shell-script-loop
|
||||
$PANDOC --standalone --biblatex $manuscript.md -o $manuscript.tex --template $template $BIBLIOGRAPHIES
|
||||
|
||||
msg "latexmk $manuscript.tex to PDF"
|
||||
$LATEXMK -bibtex -pdf $manuscript
|
||||
|
||||
if [[ $convert_formats == "true" || $convert_html == "true" ]]; then
|
||||
# TeX to HTML
|
||||
# successfully produces HTML but after lots of error-like warnings and non-zero exit
|
||||
msg "Converting $manuscript.tex to HTML"
|
||||
# this command creates a HTML file as expected, but returns a non-zero exit code
|
||||
# which causes this script to exit immediately afterwards. Circumvented by "|| true"
|
||||
# --output-dir works, but also produces all the auxiliary files in the root (very weird)
|
||||
make4ht --format html5 $manuscript.tex || true
|
||||
fi
|
||||
|
||||
if [[ $convert_formats == "true" ]]; then
|
||||
# ODT is not too bad, better than html -> docx using pandoc
|
||||
# pandoc cannot find figures or images, paths must be messed up...
|
||||
msg "Converting $manuscript.html to ODT"
|
||||
pandoc -s $manuscript.html -o $manuscript.odt
|
||||
msg "Converting $manuscript.html to DOCX"
|
||||
pandoc -s $manuscript.html -o $manuscript.docx
|
||||
# to also convert to to DOC, consider abiword (works but produces broken equations and tables)
|
||||
# https://stackoverflow.com/a/8384078/1198249
|
||||
# if you want this, please run it on a workstation, not luxor
|
||||
# (abiword is installed on workstations)
|
||||
# abiword --to=doc $manuscript.odt
|
||||
fi
|
||||
done
|
||||
|
||||
|
||||
exit 0
|
||||
Loading…
Reference in New Issue